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1981. Relapse patterns and outcome after relapse in standard risk medulloblastoma: a report from the HIT-SIOP-PNET4 study.

作者: Magnus Sabel.;Gudrun Fleischhack.;Stephan Tippelt.;Göran Gustafsson.;François Doz.;Rolf Kortmann.;Maura Massimino.;Aurora Navajas.;Katja von Hoff.;Stefan Rutkowski.;Monika Warmuth-Metz.;Steven C Clifford.;Torsten Pietsch.;Barry Pizer.;Birgitta Lannering.; .
来源: J Neurooncol. 2016年129卷3期515-524页
The HIT-SIOP-PNET4 randomised trial for standard risk medulloblastoma (MB) (2001-2006) included 338 patients and compared hyperfractionated and conventional radiotherapy. We here report the long-term outcome after a median follow up of 7.8 years, including detailed information on relapse and the treatment of relapse. Data were extracted from the HIT Group Relapsed MB database and by way of a specific case report form. The event-free and overall (OS) survival at 10 years were 76 ± 2 % and 78 ± 2 % respectively with no significant difference between the treatment arms. Seventy-two relapses and three second malignant neoplasms were reported. Thirteen relapses (18 %) were isolated local relapses in the posterior fossa (PF) and 59 (82 %) were craniospinal, metastatic relapses (isolated or multiple) with or without concurrent PF disease. Isolated PF relapse vs all other relapses occurred at mean/median of 38/35 and 28/26 months respectively (p = 0.24). Late relapse, i.e. >5 years from diagnosis, occurred in six patients (8 %). Relapse treatment consisted of combinations of surgery (25 %), focal radiotherapy (RT 22 %), high dose chemotherapy with stem cell rescue (HDSCR 21 %) and conventional chemotherapy (90 %). OS at 5 years after relapse was 6.0 ± 4 %. In multivariate analysis; isolated relapse in PF, and surgery were significantly associated with prolonged survival whereas RT and HDSCR were not. Survival after relapse was not related to biological factors and was very poor despite several patients receiving intensive treatments. Exploration of new drugs is warranted, preferably based on tumour biology from biopsy of the relapsed tumour.

1982. Adaptive Randomization of Neratinib in Early Breast Cancer.

作者: John W Park.;Minetta C Liu.;Douglas Yee.;Christina Yau.;Laura J van 't Veer.;W Fraser Symmans.;Melissa Paoloni.;Jane Perlmutter.;Nola M Hylton.;Michael Hogarth.;Angela DeMichele.;Meredith B Buxton.;A Jo Chien.;Anne M Wallace.;Judy C Boughey.;Tufia C Haddad.;Stephen Y Chui.;Kathleen A Kemmer.;Henry G Kaplan.;Claudine Isaacs.;Rita Nanda.;Debasish Tripathy.;Kathy S Albain.;Kirsten K Edmiston.;Anthony D Elias.;Donald W Northfelt.;Lajos Pusztai.;Stacy L Moulder.;Julie E Lang.;Rebecca K Viscusi.;David M Euhus.;Barbara B Haley.;Qamar J Khan.;William C Wood.;Michelle Melisko.;Richard Schwab.;Teresa Helsten.;Julia Lyandres.;Sarah E Davis.;Gillian L Hirst.;Ashish Sanil.;Laura J Esserman.;Donald A Berry.; .
来源: N Engl J Med. 2016年375卷1期11-22页
The heterogeneity of breast cancer makes identifying effective therapies challenging. The I-SPY 2 trial, a multicenter, adaptive phase 2 trial of neoadjuvant therapy for high-risk clinical stage II or III breast cancer, evaluated multiple new agents added to standard chemotherapy to assess the effects on rates of pathological complete response (i.e., absence of residual cancer in the breast or lymph nodes at the time of surgery).

1983. Poor concordance between CA-125 and RECIST at the time of disease progression in patients with platinum-resistant ovarian cancer: analysis of the AURELIA trial.

作者: K Lindemann.;G Kristensen.;M R Mirza.;L Davies.;F Hilpert.;I Romero.;A Ayhan.;A Burges.;M J Rubio.;F Raspagliesi.;M Huizing.;G-J Creemers.;M Lykka.;C K Lee.;V Gebski.;E Pujade-Lauraine.
来源: Ann Oncol. 2016年27卷8期1505-10页
Data on CA-125 as a predictor of disease progression (PD) in ovarian cancer come predominantly from patients with platinum-sensitive disease receiving chemotherapy alone. We assessed concordance between CA-125-defined and RECIST-defined PD using data from the Gynecologic Cancer InterGroup (GCIG) randomized phase III AURELIA trial in platinum-resistant ovarian cancer (PROC).

1984. A Randomized Phase II Study of FOLFOX With or Without the MET Inhibitor Onartuzumab in Advanced Adenocarcinoma of the Stomach and Gastroesophageal Junction.

作者: Manish A Shah.;Jae-Yong Cho.;Iain B Tan.;Niall C Tebbutt.;Chia-Jui Yen.;Alice Kang.;David S Shames.;Lilian Bu.;Yoon-Koo Kang.
来源: Oncologist. 2016年21卷9期1085-90页
The phase II YO28252 study (NCT01590719) examined first-line onartuzumab plus mFOLFOX6 in patients with metastatic, human epidermal growth factor receptor 2-negative adenocarcinoma of the stomach or gastroesophageal junction. MET immunohistochemistry expression as a biomarker of onartuzumab activity was also examined.

1985. The effect of celecoxib on DNA methylation of CDH13, TFPI2, and FSTL1 in squamous cell carcinoma of the esophagus in vivo.

作者: Jun Feng Liu.;Yi Shuai Li.;Paul A Drew.;Chao Zhang.
来源: Anticancer Drugs. 2016年27卷9期848-53页
This study examined the in-vivo effect of the NSAID celecoxib on DNA methylation in the promoter region of the tumor-suppressor genes cadherin 13, tissue factor pathway inhibitor 12, and follistatin-like protein 1, and on apoptosis, in esophageal squamous cell carcinoma (ESCC). Forty-five patients who underwent an esophagectomy for ESCC were allocated to either a treatment group (n=22) or a control group (n=23). Patients in the treatment group were administered 800 mg/day of celecoxib for 14 days before surgery. Patients in the control group did not take any type of NSAID. Biopsies of the tumor were collected before surgery and tissue from the resection specimens after surgery. Methylation-specific PCR was used to measure DNA methylation and apoptosis was measured by flow cytometry. There was no difference in the proportion of patients with methylation for each of the genes between the patient groups before treatment. In those patients with pretreatment methylation, there was a significant reduction in the proportion with methylation and a significant increase in the corresponding messenger RNA expression after treatment with celecoxib. In those tissues in which there was a reduction in methylation following celecoxib treatment, there was a significant increase in the percentage of apoptotic cells, but not in the tissues with no change in methylation. In ESCC, in-vivo treatment with celecoxib is associated with a reduction in DNA methylation and increase in messenger RNA expression of tumor-suppressor genes, and increases in apoptosis.

1986. DNA repair gene polymorphisms in non-small-cell lung cancer patients treated with first-line platinum-containing chemotherapy.

作者: Eliana Rulli.;Mirko Marabese.;Sheila Piva.;Lucia Bonomi.;Elisa Caiola.;Monica Ganzinelli.
来源: Tumori. 2016年102卷4期367-75页
Single nucleotide polymorphisms (SNPs) in the DNA repair genes are believed to contribute to the clinical outcome of patients receiving platinum-based chemotherapy. We investigated the impact of 2 SNPs of excision repair cross-complementation group 1 and 2 of xeroderma pigmentosum complementation group G on the outcome in patients with non-small-cell lung cancer (NSCLC) treated with platinum-based chemotherapy.

1987. Tumor marker analyses from the phase III, placebo-controlled, FASTACT-2 study of intercalated erlotinib with gemcitabine/platinum in the first-line treatment of advanced non-small-cell lung cancer.

作者: Tony Mok.;Guia Ladrera.;Vichien Srimuninnimit.;Virote Sriuranpong.;Chong-Jen Yu.;Sumitra Thongprasert.;Jennifer Sandoval-Tan.;Jin Soo Lee.;Fatima Fuerte.;David S Shames.;Barbara Klughammer.;Matt Truman.;Pablo Perez-Moreno.;Yi-Long Wu.
来源: Lung Cancer. 2016年98卷1-8页
The FASTACT-2 study of intercalated erlotinib with chemotherapy in Asian patients found that EGFR mutations were the main driver behind the significant progression-free survival (PFS) benefit noted in the overall population. Further exploratory biomarker analyses were conducted to provide additional insight.

1988. Survival, safety, and prognostic factors for outcome with Regorafenib in patients with metastatic colorectal cancer refractory to standard therapies: results from a multicenter study (REBECCA) nested within a compassionate use program.

作者: Antoine Adenis.;Christelle de la Fouchardiere.;Bernard Paule.;Pascal Burtin.;David Tougeron.;Jennifer Wallet.;Louis-Marie Dourthe.;Pierre-Luc Etienne.;Laurent Mineur.;Stéphanie Clisant.;Jean-Marc Phelip.;Andrew Kramar.;Thierry Andre.
来源: BMC Cancer. 2016年16卷412页
Randomized trials have shown a survival benefit for regorafenib over placebo in patients with metastatic colorectal cancer (mCRC) that progressed after standard therapies. We evaluated survival and safety outcomes in patients treated with regorafenib in a real-life setting.

1989. Detection of circulating tumor cells using manually performed immunocytochemistry (MICC) does not correlate with outcome in patients with early breast cancer - Results of the German SUCCESS-A- trial.

作者: Julia Jueckstock.;Brigitte Rack.;Thomas W P Friedl.;Christoph Scholz.;Julia Steidl.;Elisabeth Trapp.;Hans Tesch.;Helmut Forstbauer.;Ralf Lorenz.;Mahdi Rezai.;Lothar Häberle.;Marianna Alunni-Fabbroni.;Andreas Schneeweiss.;Matthias W Beckmann.;Werner Lichtenegger.;Peter A Fasching.;Klaus Pantel.;Wolfgang Janni.; .
来源: BMC Cancer. 2016年16卷401页
Recently, the prognostic significance of circulating tumor cells (CTCs) in primary breast cancer as assessed using the Food-and-Drug-Administration-approved CellSearch® system has been demonstrated. Here, we evaluated the prognostic relevance of CTCs, as determined using manually performed immunocytochemistry (MICC) in peripheral blood at primary diagnosis, in patients from the prospectively randomized multicenter SUCCESS-A trial (EudraCT2005000490-21).

1990. Sequence variation in mature microRNA-608 and benefit from neo-adjuvant treatment in locally advanced rectal cancer patients.

作者: Francesco Sclafani.;Ian Chau.;David Cunningham.;Andrea Lampis.;Jens Claus Hahne.;Michele Ghidini.;Hazel Lote.;Domenico Zito.;Josep Tabernero.;Bengt Glimelius.;Andres Cervantes.;Ruwaida Begum.;David Gonzalez De Castro.;Sanna Hulkki Wilson.;Clare Peckitt.;Zakaria Eltahir.;Andrew Wotherspoon.;Diana Tait.;Gina Brown.;Jacqueline Oates.;Chiara Braconi.;Nicola Valeri.
来源: Carcinogenesis. 2016年37卷9期852-7页
Single nucleotide polymorphisms (SNPs) in microRNA genes have been associated with colorectal cancer (CRC) risk, survival and response to treatment. Conflicting results are available on the association between rs4919510, a SNP in mature miR-608 and clinical outcome in CRC. Here, we analyzed the association between rs4919510 and benefit from perioperative treatment in a randomised phase II trial of neoadjuvant Capecitabine and Oxaliplatin (CAPOX) followed by chemo-radiotherapy, surgery and adjuvant CAPOX ± Cetuximab in high-risk locally advanced rectal cancer (LARC). A total of 155/164 (94.5%) patients were assessable. 95 (61.3%) were homozygous for CC, 55 (35.5%) heterozygous (CG) and 5 (3.2%) homozygous for GG. Median follow-up was 64.9 months. In the CAPOX arm the 5-year progression-free survival (PFS) and overall survival (OS) rates were 54.6% and 60.7% for CC and 82.0% and 82.1% for CG/GG, respectively (HR PFS 0.13, 95% CI: 0.12-0.83, P = 0.02; HR OS 0.38, 95% CI: 0.14-1.01, P = 0.05). In the CAPOX-C arm PFS and OS were 73.2 and 82.2%, respectively for CC carriers and 64.6 and 73.1% for CG/GG carriers (HR PFS 1.38, 95% CI: 0.61-3.13, P = 0.44; HR OS 1.34, 95% CI: 0.52-3.48, P = 0.55). An interaction was found between study treatment and rs4919510 genotype for both PFS (P = 0.02) and OS (P = 0.07). This is the first study investigating rs4919510 in LARC. The CC genotype appeared to be associated with worse prognosis compared to the CG/GG genotype in patients treated with chemotherapy and chemo-radiotherapy alone. Addition of Cetuximab to chemotherapy and chemo-radiotherapy in CC carriers appeared to improve clinical outcome.

1991. Ribociclib plus letrozole in early breast cancer: A presurgical, window-of-opportunity study.

作者: G Curigliano.;P Gómez Pardo.;F Meric-Bernstam.;P Conte.;M P Lolkema.;J T Beck.;A Bardia.;M Martínez García.;F Penault-Llorca.;S Dhuria.;Z Tang.;N Solovieff.;M Miller.;E Di Tomaso.;S A Hurvitz.
来源: Breast. 2016年28卷191-8页
Cyclin D-cyclin-dependent kinase (CDK) 4/6-inhibitor of CDK4/6-retinoblastoma (Rb) pathway hyperactivation is associated with hormone receptor-positive (HR+) breast cancer (BC). This study assessed the biological activity of ribociclib (LEE011; CDK4/6 inhibitor) plus letrozole compared with single-agent letrozole in the presurgical setting.

1992. Randomized Noninferiority Trial of Telephone Delivery of BRCA1/2 Genetic Counseling Compared With In-Person Counseling: 1-Year Follow-Up.

作者: Anita Y Kinney.;Laurie E Steffen.;Barbara H Brumbach.;Wendy Kohlmann.;Ruofei Du.;Ji-Hyun Lee.;Amanda Gammon.;Karin Butler.;Saundra S Buys.;Antoinette M Stroup.;Rebecca A Campo.;Kristina G Flores.;Jeanne S Mandelblatt.;Marc D Schwartz.
来源: J Clin Oncol. 2016年34卷24期2914-24页
The ongoing integration of cancer genomic testing into routine clinical care has led to increased demand for cancer genetic services. To meet this demand, there is an urgent need to enhance the accessibility and reach of such services, while ensuring comparable care delivery outcomes. This randomized trial compared 1-year outcomes for telephone genetic counseling with in-person counseling among women at risk of hereditary breast and/or ovarian cancer living in geographically diverse areas.

1993. A phase I followed by a randomized phase II trial of two cycles carboplatin-olaparib followed by olaparib monotherapy versus capecitabine in BRCA1- or BRCA2-mutated HER2-negative advanced breast cancer as first line treatment (REVIVAL): study protocol for a randomized controlled trial.

作者: Philip C Schouten.;Gwen M H E Dackus.;Serena Marchetti.;Harm van Tinteren.;Gabe S Sonke.;Jan H M Schellens.;Sabine C Linn.
来源: Trials. 2016年17卷1期293页
Preclinical studies in breast cancer models showed that BRCA1 or BRCA2 deficient cell lines, when compared to BRCA proficient cell lines, are extremely sensitive to PARP1 inhibition. When combining the PARP1 inhibitor olaparib with cisplatin in a BRCA1-mutated breast cancer mouse model, the combination induced a larger response than either of the two compounds alone. Several clinical studies have investigated single agent therapy or combinations of both drugs, but no randomized clinical evidence exists for the superiority of carboplatin-olaparib versus standard of care therapy in patients with BRCA1- or BRCA2--mutated metastatic breast cancer.

1994. Analysing adverse events by time-to-event models: the CLEOPATRA study.

作者: Tanja Proctor.;Martin Schumacher.
来源: Pharm Stat. 2016年15卷4期306-14页
When analysing primary and secondary endpoints in a clinical trial with patients suffering from a chronic disease, statistical models for time-to-event data are commonly used and accepted. This is in contrast to the analysis of data on adverse events where often only a table with observed frequencies and corresponding test statistics is reported. An example is the recently published CLEOPATRA study where a three-drug regimen is compared with a two-drug regimen in patients with HER2-positive first-line metastatic breast cancer. Here, as described earlier, primary and secondary endpoints (progression-free and overall survival) are analysed using time-to-event models, whereas adverse events are summarized in a simple frequency table, although the duration of study treatment differs substantially. In this paper, we demonstrate the application of time-to-event models to first serious adverse events using the data of the CLEOPATRA study. This will cover the broad range between a simple incidence rate approach over survival and competing risks models (with death as a competing event) to multi-state models. We illustrate all approaches by means of graphical displays highlighting the temporal dynamics and compare the obtained results. For the CLEOPATRA study, the resulting hazard ratios are all in the same order of magnitude. But the use of time-to-event models provides valuable and additional information that would potentially be overlooked by only presenting incidence proportions. These models adequately address the temporal dynamics of serious adverse events as well as death of patients. Copyright © 2016 John Wiley & Sons, Ltd.

1995. SPAG5 as a prognostic biomarker and chemotherapy sensitivity predictor in breast cancer: a retrospective, integrated genomic, transcriptomic, and protein analysis.

作者: Tarek M A Abdel-Fatah.;Devika Agarwal.;Dong-Xu Liu.;Roslin Russell.;Oscar M Rueda.;Karen Liu.;Bing Xu.;Paul M Moseley.;Andrew R Green.;Alan G Pockley.;Robert C Rees.;Carlos Caldas.;Ian O Ellis.;Graham R Ball.;Stephen Y T Chan.
来源: Lancet Oncol. 2016年17卷7期1004-1018页
Proliferation markers and profiles have been recommended for guiding the choice of systemic treatments for breast cancer. However, the best molecular marker or test to use has not yet been identified. We did this study to identify factors that drive proliferation and its associated features in breast cancer and assess their association with clinical outcomes and response to chemotherapy.

1996. Molecular dissection of valproic acid effects in acute myeloid leukemia identifies predictive networks.

作者: Frank G Rücker.;Katharina M Lang.;Markus Fütterer.;Vladimir Komarica.;Mathias Schmid.;Hartmut Döhner.;Richard F Schlenk.;Konstanze Döhner.;Steen Knudsen.;Lars Bullinger.
来源: Epigenetics. 2016年11卷7期517-25页
Histone deacetylase inhibitors (HDACIs) like valproic acid (VPA) display activity in leukemia models and induce tumor-selective cytotoxicity against acute myeloid leukemia (AML) blasts. As there are limited data on HDACIs effects, we aimed to dissect VPA effects in vitro using myeloid cell lines with the idea to integrate findings with in vivo data from AML patients treated with VPA additionally to intensive chemotherapy (n = 12). By gene expression profiling we identified an in vitro VPA response signature enriched for genes/pathways known to be implicated in cell cycle arrest, apoptosis, and DNA repair. Following VPA treatment in vivo, gene expression changes in AML patients showed concordant results with the in vitro VPA response despite concomitant intensive chemotherapy. Comparative miRNA profiling revealed VPA-associated miRNA expression changes likely contributing to a VPA-induced reversion of deregulated gene expression. In addition, we were able to define markers predicting VPA response in vivo such as CXCR4 and LBH. These could be validated in an independent cohort of VPA and intensive chemotherapy treated AML patients (n = 114) in which they were inversely correlated with relapse-free survival. In summary, our data provide new insights into the molecular mechanisms of VPA in myeloid blasts, which might be useful in further advancing HDAC inhibition based treatment approaches in AML.

1997. Effect of Pathologic Tumor Response and Nodal Status on Survival in the Medical Research Council Adjuvant Gastric Infusional Chemotherapy Trial.

作者: Elizabeth C Smyth.;Matteo Fassan.;David Cunningham.;William H Allum.;Alicia F C Okines.;Andrea Lampis.;Jens C Hahne.;Massimo Rugge.;Clare Peckitt.;Matthew Nankivell.;Ruth Langley.;Michele Ghidini.;Chiara Braconi.;Andrew Wotherspoon.;Heike I Grabsch.;Nicola Valeri.
来源: J Clin Oncol. 2016年34卷23期2721-7页
The Medical Research Council Adjuvant Gastric Infusional Chemotherapy (MAGIC) trial established perioperative epirubicin, cisplatin, and fluorouracil chemotherapy as a standard of care for patients with resectable esophagogastric cancer. However, identification of patients at risk for relapse remains challenging. We evaluated whether pathologic response and lymph node status after neoadjuvant chemotherapy are prognostic in patients treated in the MAGIC trial.

1998. Spectrum and prognostic relevance of driver gene mutations in acute myeloid leukemia.

作者: Klaus H Metzeler.;Tobias Herold.;Maja Rothenberg-Thurley.;Susanne Amler.;Maria C Sauerland.;Dennis Görlich.;Stephanie Schneider.;Nikola P Konstandin.;Annika Dufour.;Kathrin Bräundl.;Bianka Ksienzyk.;Evelyn Zellmeier.;Luise Hartmann.;Philipp A Greif.;Michael Fiegl.;Marion Subklewe.;Stefan K Bohlander.;Utz Krug.;Andreas Faldum.;Wolfgang E Berdel.;Bernhard Wörmann.;Thomas Büchner.;Wolfgang Hiddemann.;Jan Braess.;Karsten Spiekermann.; .
来源: Blood. 2016年128卷5期686-98页
The clinical and prognostic relevance of many recently identified driver gene mutations in adult acute myeloid leukemia (AML) is poorly defined. We sequenced the coding regions or hotspot areas of 68 recurrently mutated genes in a cohort of 664 patients aged 18 to 86 years treated on 2 phase 3 trials of the German AML Cooperative Group (AMLCG). The median number of 4 mutations per patient varied according to cytogenetic subgroup, age, and history of previous hematologic disorder or antineoplastic therapy. We found patterns of significantly comutated driver genes suggesting functional synergism. Conversely, we identified 8 virtually nonoverlapping patient subgroups, jointly comprising 78% of AML patients, that are defined by mutually exclusive genetic alterations. These subgroups, likely representing distinct underlying pathways of leukemogenesis, show widely divergent outcomes. Furthermore, we provide detailed information on associations between gene mutations, clinical patient characteristics, and therapeutic outcomes in this large cohort of uniformly treated AML patients. In multivariate analyses including a comprehensive set of molecular and clinical variables, we identified DNMT3A and RUNX1 mutations as important predictors of shorter overall survival (OS) in AML patients <60 years, and particularly in those with intermediate-risk cytogenetics. NPM1 mutations in the absence of FLT3-ITD, mutated TP53, and biallelic CEBPA mutations were identified as important molecular prognosticators of OS irrespective of patient age. In summary, our study provides a comprehensive overview of the spectrum, clinical associations, and prognostic relevance of recurrent driver gene mutations in a large cohort representing a broad spectrum and age range of intensively treated AML patients.

1999. A Prospective Evaluation of Circulating Tumor Cells and Cell-Free DNA in EGFR-Mutant Non-Small Cell Lung Cancer Patients Treated with Erlotinib on a Phase II Trial.

作者: Masahiko Yanagita.;Amanda J Redig.;Cloud P Paweletz.;Suzanne E Dahlberg.;Allison O'Connell.;Nora Feeney.;Myriam Taibi.;David Boucher.;Geoffrey R Oxnard.;Bruce E Johnson.;Daniel B Costa.;David M Jackman.;Pasi A Jänne.
来源: Clin Cancer Res. 2016年22卷24期6010-6020页
Genotype-directed therapy is the standard of care for advanced non-small cell lung cancer (NSCLC), but obtaining tumor tissue for genotyping remains a challenge. Circulating tumor cell (CTC) or cell-free DNA (cfDNA) analysis may allow for noninvasive evaluation. This prospective trial evaluated CTCs and cfDNA in EGFR-mutant NSCLC patients treated with erlotinib until progression.

2000. Relapsed diffuse large B-cell lymphoma present different genomic profiles between early and late relapses.

作者: Julien Broséus.;Gaili Chen.;Sébastien Hergalant.;Gérard Ramstein.;Nicolas Mounier.;Jean-Louis Guéant.;Pierre Feugier.;Christian Gisselbrecht.;Catherine Thieblemont.;Rémi Houlgatte.
来源: Oncotarget. 2016年7卷51期83987-84002页
Despite major advances in first-line treatment, a significant proportion of patients with diffuse large B-cell lymphoma (DLBCL) will experience treatment failure. Prognosis is particularly poor for relapses occurring less than one year after the end of first-line treatment (early relapses/ER) compared to those occurring more than one year after (late relapses/LR). To better understand genomic alterations underlying the delay of relapse, we identified copy number variations (CNVs) on 39 tumor samples from a homogeneous series of patients included in the Collaborative Trial in Relapsed Aggressive Lymphoma (CORAL) prospective study. To identify CNVs associated with ER or LR, we devised an original method based on Significance Analysis of Microarrays, a permutation-based method which allows control of false positives due to multiple testing. Deletions of CDKN2A/B (28%) and IBTK (23%) were frequent events in relapsed DLBCLs. We identified 56 protein-coding genes and 25 long non-coding RNAs with significantly differential CNVs distribution between ER and LR DLBCLs, with a false discovery rate < 0.05. In ER DLBCLs, CNVs were related to transcription regulation, cell cycle and apoptosis, with duplications of histone H1T (31%), deletions of DIABLO (26%), PTMS (21%) and CK2B (15%). In LR DLBCLs, CNVs were related to immune response, with deletions of B2M (20%) and CD58 (10%), cell proliferation regulation, with duplications of HES1 (25%) and DVL3 (20%), and transcription regulation, with MTERF4 deletions (20%). This study provides new insights into the genetic aberrations in relapsed DLBCLs and suggest pathway-targeted therapies in ER and LR DLBCLs.
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